I can't seem to find where the Maps are stored in the new release...am I missing something?
Maps are now stored in the database starting in 9.5
Yup! Are you looking for them because you want to back them up? The Export Map command can put them into files for you.
Administrator Guide : Creating a Basic Map : Saving Maps
Saving MapsOrion Network Atlas saves your maps directly to the server to which you are connected.
To save a map:1. Click the Orion Network Atlas Button, and then click Save.2. If you are saving the map for the first time, name the map and then click OK.
Note: To save a map to your hard drive instead of your Orion server, click the Orion Network Atlas Button, and then select Export > Export Map.