please post it here if you find out =)
There is an option to base line upon boot or wait a bit and do it in the background more or less. But to me your issue sounds like more of a performance bottleneck. Either at SQL or the main server. As I found out recently the more pollers you add and the more nodes you add to them cause a greater load on the main box. I am about to roll to a 3rd poller and I have to replace my main box at the same time as it is getting torched on a daily basis.
I would still open a support ticket. Often times there is garbage left behind in the DB that they will clean up that will help a lot.
received confirmation from support that
"You are correct in your logic Robert. The baseline will still be done even when disabled...it will just be done during the initial poll. So disabling it will have no detrimental effects."
I've disabled the option on our farm & will see how long Orion takes to become responsive on its next restart.
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