You need "FTP Voyager Scheduler" running as a System Service, which runs with the Local System account. Scheduler Site Profiles are setup under the Tools menu of FTP Voyager. Everything else is setup under Scheduler's Management Console. You need a single Task with one or more Actions. The simplest Action will be to Move Up.
Local File: C:\Folder1\Folder2\*
Remote Folder: /Folder1/Folder2
Log File Path: C:\Folder1\sFTP_LogFiles\FTPVoyagerSchedulerLog_%Y-%N-%D.log
Hope this helps,