Cisco ACE30 configurations in conflict

We are using NCM to download our ACE blade configurations (Admin and contexts separately) and are getting false positives in the report as to conflicts between the running configuration and the startup config. In comparing the 2, the only difference is that the running configuration has a 1st line of "Generating Configuration..." and the startup does not. Has anyone else run into this and is there a suggestion of how to either suppress that 1st line when NCM pulls the running configuration or to get the conflict reporter to ignore it?